Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABCF2ATP-binding cassette, sub-family F (GCN20), member 2b. (533 aa)    
Predicted Functional Partners:
ABCE1
ATP binding cassette subfamily E member 1.
   
 
 0.987
EIF5B
Eukaryotic translation initiation factor 5B.
  
 
 0.916
ABCG5
ATP binding cassette subfamily G member 5.
      
 0.843
H3A7U5_LATCH
Proliferation-associated 2G4, a.
  
 
 0.813
ABCC12
ATP binding cassette subfamily C member 12.
     
 0.763
GNL1
G protein nucleolar 1 (putative).
   
 
 0.758
MRPL4
Mitochondrial ribosomal protein L4.
   
 
 0.758
LOC102348026
Uncharacterized protein.
   
 
 0.739
LOC102358575
Uncharacterized protein.
   
 
 0.739
NOP58
NOP58 ribonucleoprotein.
   
 
 0.733
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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