STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102362372POU domain protein. (375 aa)    
Predicted Functional Partners:
PCF11
PCF11 cleavage and polyadenylation factor subunit.
     
 0.476
SNAPC4
Small nuclear RNA activating complex polypeptide 4.
    
  0.467
SALL1
Spalt like transcription factor 1.
   
 0.448
SALL4
Spalt like transcription factor 4.
   
 0.447
GTF2B
General transcription factor IIB.
    
 0.442
TAF9
TATA-box binding protein associated factor 9.
     
 0.421
FOXJ3
Forkhead box J3.
     
 0.419
SALL2
Uncharacterized protein.
    
 0.416
SOX14
SRY-box transcription factor 14.
   
 0.404
SOX18
SRY-box transcription factor 18.
    
 0.401
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.