Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX28DEAD-box helicase 28. (573 aa)    
Predicted Functional Partners:
FASTKD2
FAST kinase domains 2.
   
 
 0.982
MRM3
Mitochondrial rRNA methyltransferase 3.
  
 
 0.973
TRUB2
TruB pseudouridine synthase family member 2.
  
 
 0.956
NGDN
Neuroguidin.
   
 0.955
UTP3
UTP3 small subunit processome component.
   
  0.945
MRPL4
Mitochondrial ribosomal protein L4.
   
 0.942
MTERF3
Mitochondrial transcription termination factor 3.
    
 
 0.914
MRPL41
Mitochondrial ribosomal protein L41.
    
 
 0.912
WDR46
WD repeat domain 46.
   
 0.910
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.904
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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