Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC177Uncharacterized protein. (640 aa)    
Predicted Functional Partners:
SOGA3
SOGA family member 3a.
      
 0.815
SNX25
Sorting nexin 25.
     
 0.806
RAB22A
RAB22A, member RAS oncogene family.
     
 0.800
FOXN4
Forkhead box N4.
    
 
 0.792
CCDC9
Coiled-coil domain containing 9.
    
 0.773
LENG1
Leukocyte receptor cluster member 1.
    
 
 0.709
RBM33
RNA binding motif protein 33.
    
 0.663
GTPBP1
GTP binding protein 1.
      
 0.655
H3ABC7_LATCH
Rho GTPase activating protein 33.
   
  
 0.653
POGZ
Pogo transposable element derived with ZNF domain.
    
 0.646
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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