Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102358143NACHT domain-containing protein. (1014 aa)    
Predicted Functional Partners:
WDR90
WD repeat domain 90.
   
 0.495
LOC102354290
Uncharacterized protein.
    
   0.458
RIPK2
Receptor interacting serine/threonine kinase 2.
   
 0.426
LOC102348796
Uncharacterized protein.
   
 0.426
RSPH4A
Radial spoke head component 4A.
   
 
 0.413
RPS27A
Ribosomal protein S27a.
    
  0.405
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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