Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SERBP1SERPINE1 mRNA binding protein 1. (400 aa)    
Predicted Functional Partners:
RPS3
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.990
RPS27A
Ribosomal protein S27a.
   
 
 0.985
RPL7A
Ribosomal protein L7a.
   
 
 0.984
RPS3A
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
   0.983
RPS15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.982
RACK1
Receptor for activated C kinase 1.
   
 
 0.982
RPS20
Ribosomal_S10 domain-containing protein.
   
 
 0.973
RPL4
Ribosomal protein L4.
   
 
 0.958
RPS10
Ribosomal protein S10.
   
 
 0.957
RPS2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
   0.953
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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