Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
H3A9P1_LATCHWu:fc23c09. (375 aa)    
Predicted Functional Partners:
SDR42E2
Short chain dehydrogenase/reductase family 42E, member 2.
      
 0.549
H3AEB4_LATCH
Uncharacterized protein.
      
 0.549
LOC102354453
Uncharacterized protein.
  
     0.475
H2ZUG6_LATCH
Calponin-homology (CH) domain-containing protein.
  
     0.472
RSU1
Ras suppressor protein 1.
  
     0.466
LRRC57
Leucine rich repeat containing 57.
  
     0.463
LRRC8A
Leucine rich repeat containing 8 VRAC subunit A.
  
     0.460
LRRC47
Leucine rich repeat containing 47.
  
     0.453
LRRC18
Leucine rich repeat containing 18.
  
     0.452
LRRC58
Leucine rich repeat containing 58.
  
     0.436
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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