Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRKD1Protein kinase D1. (787 aa)    
Predicted Functional Partners:
PKD1
Polycystin 1, transient receptor potential channel interacting.
    
 
 0.662
H3B277_LATCH
Uncharacterized protein.
    
 
 0.662
H3AKS1_LATCH
Uncharacterized protein.
 
      0.588
CD40LG
CD40 ligand; Belongs to the tumor necrosis factor family.
      
 0.585
CERT1
Ceramide transporter 1.
    
 0.531
NFKBIA
Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.
    
 
 0.530
PKDREJ
Polycystin family receptor for egg jelly.
    
 
 0.487
KIDINS220
Kinase D interacting substrate 220.
    
 
 0.456
RAP1B
RAP1B, member of RAS oncogene family.
      
 0.452
RAP1A
RAP1A, member of RAS oncogene family b.
      
 0.452
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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