Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H3A9Q3_LATCHLeuk-A4-hydro_C domain-containing protein. (163 aa)    
Predicted Functional Partners:
AOPEP
Peptidase_M1 domain-containing protein.
 
     0.923
SUOX
Sulfite oxidase.
      
 0.524
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
  
 0.468
DENND1A
DENN domain containing 1A.
      
 0.462
ERICH6B
FAM194 domain-containing protein.
      
 0.440
SUN2
SUN domain-containing protein.
    
 
 0.401
SUN1
Sad1 and UNC84 domain containing 1.
    
 
 0.401
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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