Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102349499Uncharacterized protein. (315 aa)    
Predicted Functional Partners:
PITPNM3
PITPNM family member 3.
 
    
 0.901
AGTRAP
Angiotensin II receptor associated protein.
    
 
 0.816
HELZ
Helicase with zinc finger.
      
 0.641
CATSPER2
Cation channel sperm associated 2.
      
 0.641
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
      
 0.608
NUP107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 
 0.592
CDV3
CDV3 homolog.
   
  
 0.589
ARFGEF3
ARFGEF family member 3.
   
  
 0.568
SERPINI2
Serpin family I member 2; Belongs to the serpin family.
      
 0.558
DCBLD2
Discoidin, CUB and LCCL domain containing 2.
      
 0.537
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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