Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYNGR1Synaptogyrin. (233 aa)    
Predicted Functional Partners:
LOC102367143
Uncharacterized protein.
    
   0.682
TAB1
TGF-beta activated kinase 1 (MAP3K7) binding protein 1.
 
 
    0.670
VAMP3
Vesicle associated membrane protein 3.
      
 0.570
ICK
Intestinal cell kinase.
   
    0.559
MOK
MOK protein kinase; Belongs to the protein kinase superfamily.
   
    0.559
MAK
Male germ cell associated kinase.
   
    0.559
TMUB1
Transmembrane and ubiquitin like domain containing 1.
      
 0.551
TMEM37
Transmembrane protein 37.
      
 0.551
GABRA2
Gamma-aminobutyric acid type A receptor alpha2 subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
      
 0.543
ARPC1B
Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.
   
    0.542
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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