Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNPC3RNA binding region (RNP1, RRM) containing 3. (538 aa)    
Predicted Functional Partners:
ZMAT5
Zinc finger matrin-type 5.
   
 0.999
ZCRB1
Zinc finger CCHC-type and RNA binding motif containing 1.
    
 0.997
ZRSR2
Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2.
   
 0.993
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.993
H2ZZC6_LATCH
Sm domain-containing protein.
   
 0.987
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.981
SNRPG
Small nuclear ribonucleoprotein G.
   
 0.959
SF3B2
Splicing factor 3b subunit 2.
   
 0.939
SNRNP48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
    
 0.930
SNRPD2
Small nuclear ribonucleoprotein Sm D2.
   
 0.924
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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