STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3A9Y6_LATCHIg-like domain-containing protein. (148 aa)    
Predicted Functional Partners:
PSMC4
Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family.
      
 0.471
PMP22
Peripheral myelin protein 22.
      
 0.468
PTPN11
Protein tyrosine phosphatase non-receptor type 11.
    
 
 0.453
LOC102352712
Protein tyrosine phosphatase non-receptor type 11b.
    
 
 0.453
RNMT
mRNA cap guanine-N7 methyltransferase.
      
 0.424
GJB1
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.402
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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