Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MDH1BMalate dehydrogenase 1B. (470 aa)    
Predicted Functional Partners:
CS
Citrate synthase; Belongs to the citrate synthase family.
  
 0.871
TTC16
Tetratricopeptide repeat domain 16.
   
 
 0.844
MORN5
MORN repeat containing 5.
   
 
 0.815
TTC29
Tetratricopeptide repeat domain 29.
   
   0.796
MAATS1
MYCBP-associated, testis expressed 1.
   
   0.786
GOT2
Aspartate aminotransferase.
   
 0.784
DNALI1
Dynein axonemal light intermediate chain 1.
   
   0.781
AK7
Adenylate kinase 7.
   
 
 0.771
CFAP43
Cilia and flagella associated protein 43.
   
   0.768
ZMYND12
Zinc finger MYND-type containing 12.
   
   0.766
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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