LOC102345092 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102345092

Si:ch73-91k6.2. (445 aa)

Predicted Functional Partners:

FUT8

0.940

MAN2A1

0.928

MAN2A2

0.928

MGAT3

0.922

H3AXC8_LATCH

0.916

MGAT4B

0.911

MGAT2

0.903

MGAT1

0.543

EXTL3

0.436

ALG3

0.429

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALG3	LOC102345092	ENSLACP00000013105	ENSLACP00000006537	Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase; Adds the first Dol-P-Man derived mannose in an alpha-1,3 linkage to Man(5)GlcNAc(2)-PP-Dol.	Si:ch73-91k6.2.	0.429
ALG3	MGAT1	ENSLACP00000013105	ENSLACP00000011048	Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase; Adds the first Dol-P-Man derived mannose in an alpha-1,3 linkage to Man(5)GlcNAc(2)-PP-Dol.	Mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase.	0.618
ALG3	MGAT2	ENSLACP00000013105	ENSLACP00000017154	Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase; Adds the first Dol-P-Man derived mannose in an alpha-1,3 linkage to Man(5)GlcNAc(2)-PP-Dol.	Mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase.	0.429
EXTL3	FUT8	ENSLACP00000014016	ENSLACP00000016951	Exostosin like glycosyltransferase 3; Belongs to the glycosyltransferase 47 family.	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	0.548
EXTL3	LOC102345092	ENSLACP00000014016	ENSLACP00000006537	Exostosin like glycosyltransferase 3; Belongs to the glycosyltransferase 47 family.	Si:ch73-91k6.2.	0.436
EXTL3	MGAT2	ENSLACP00000014016	ENSLACP00000017154	Exostosin like glycosyltransferase 3; Belongs to the glycosyltransferase 47 family.	Mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase.	0.436
FUT8	EXTL3	ENSLACP00000016951	ENSLACP00000014016	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Exostosin like glycosyltransferase 3; Belongs to the glycosyltransferase 47 family.	0.548
FUT8	H3AXC8_LATCH	ENSLACP00000016951	ENSLACP00000014299	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Uncharacterized protein.	0.919
FUT8	LOC102345092	ENSLACP00000016951	ENSLACP00000006537	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Si:ch73-91k6.2.	0.940
FUT8	MAN2A1	ENSLACP00000016951	ENSLACP00000002976	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Alpha-mannosidase.	0.945
FUT8	MAN2A2	ENSLACP00000016951	ENSLACP00000018002	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Alpha-mannosidase.	0.945
FUT8	MGAT1	ENSLACP00000016951	ENSLACP00000011048	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase.	0.594
FUT8	MGAT2	ENSLACP00000016951	ENSLACP00000017154	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase.	0.940
FUT8	MGAT3	ENSLACP00000016951	ENSLACP00000001023	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Uncharacterized protein.	0.926
FUT8	MGAT4B	ENSLACP00000016951	ENSLACP00000014306	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B.	0.926
H3AXC8_LATCH	FUT8	ENSLACP00000014299	ENSLACP00000016951	Uncharacterized protein.	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family.	0.919
H3AXC8_LATCH	LOC102345092	ENSLACP00000014299	ENSLACP00000006537	Uncharacterized protein.	Si:ch73-91k6.2.	0.916
H3AXC8_LATCH	MGAT2	ENSLACP00000014299	ENSLACP00000017154	Uncharacterized protein.	Mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase.	0.916
H3AXC8_LATCH	MGAT3	ENSLACP00000014299	ENSLACP00000001023	Uncharacterized protein.	Uncharacterized protein.	0.900
H3AXC8_LATCH	MGAT4B	ENSLACP00000014299	ENSLACP00000014306	Uncharacterized protein.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B.	0.903