MEIS1 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MEIS1

Meis homeobox 1. (466 aa)

Predicted Functional Partners:

PBX1

0.746

TSHZ3

0.738

PBX2

0.722

H3AM53_LATCH

0.685

PBX3

0.685

H3BEW5_LATCH

0.685

PBX4

0.682

HOXA9

0.671

H3A4R0_LATCH

0.645

HOXB13

0.621

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3A4R0_LATCH	MEIS1	ENSLACP00000004631	ENSLACP00000006547	PBC domain-containing protein.	Meis homeobox 1.	0.645
H3AM53_LATCH	HOXA9	ENSLACP00000010724	ENSLACP00000019754	PBC domain-containing protein.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.554
H3AM53_LATCH	MEIS1	ENSLACP00000010724	ENSLACP00000006547	PBC domain-containing protein.	Meis homeobox 1.	0.685
H3AM53_LATCH	PBX1	ENSLACP00000010724	ENSLACP00000014235	PBC domain-containing protein.	PBX homeobox 1.	0.838
H3AM53_LATCH	PBX3	ENSLACP00000010724	ENSLACP00000020234	PBC domain-containing protein.	Pre-B-cell leukemia homeobox 3a.	0.809
H3BEW5_LATCH	HOXA9	ENSLACP00000020436	ENSLACP00000019754	PBC domain-containing protein.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.554
H3BEW5_LATCH	MEIS1	ENSLACP00000020436	ENSLACP00000006547	PBC domain-containing protein.	Meis homeobox 1.	0.685
H3BEW5_LATCH	PBX1	ENSLACP00000020436	ENSLACP00000014235	PBC domain-containing protein.	PBX homeobox 1.	0.451
H3BEW5_LATCH	PBX3	ENSLACP00000020436	ENSLACP00000020234	PBC domain-containing protein.	Pre-B-cell leukemia homeobox 3a.	0.493
HOXA9	H3AM53_LATCH	ENSLACP00000019754	ENSLACP00000010724	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	PBC domain-containing protein.	0.554
HOXA9	H3BEW5_LATCH	ENSLACP00000019754	ENSLACP00000020436	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	PBC domain-containing protein.	0.554
HOXA9	MEIS1	ENSLACP00000019754	ENSLACP00000006547	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Meis homeobox 1.	0.671
HOXA9	PBX1	ENSLACP00000019754	ENSLACP00000014235	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	PBX homeobox 1.	0.554
HOXA9	PBX2	ENSLACP00000019754	ENSLACP00000000034	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox domain-containing protein.	0.523
HOXA9	PBX3	ENSLACP00000019754	ENSLACP00000020234	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Pre-B-cell leukemia homeobox 3a.	0.554
HOXA9	PBX4	ENSLACP00000019754	ENSLACP00000018673	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Pre-B-cell leukemia transcription factor 4.	0.544
HOXB13	MEIS1	ENSLACP00000017646	ENSLACP00000006547	Homeobox B13.	Meis homeobox 1.	0.621
MEIS1	H3A4R0_LATCH	ENSLACP00000006547	ENSLACP00000004631	Meis homeobox 1.	PBC domain-containing protein.	0.645
MEIS1	H3AM53_LATCH	ENSLACP00000006547	ENSLACP00000010724	Meis homeobox 1.	PBC domain-containing protein.	0.685
MEIS1	H3BEW5_LATCH	ENSLACP00000006547	ENSLACP00000020436	Meis homeobox 1.	PBC domain-containing protein.	0.685