Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102345690Zgc:175088. (247 aa)    
Predicted Functional Partners:
CUL1
Cullin 1; Belongs to the cullin family.
    
 0.984
SKP1
S-phase kinase associated protein 1; Belongs to the SKP1 family.
    
 0.980
FBXO4
F-box protein 4.
     
 0.966
SKP2
S-phase kinase associated protein 2.
     
 0.958
LOC102345432
Zgc:153722.
  
  
0.931
FBXW7
F-box and WD repeat domain containing 7.
    
 0.928
H3A8H2_LATCH
Uncharacterized protein.
     
 0.923
ERO1B
Endoplasmic reticulum oxidoreductase 1 beta.
    
 0.912
FBXW11
F-box and WD repeat domain containing 11.
     
 0.911
RBX1
Ring-box 1.
    
 0.881
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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