Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3AA82_LATCHUncharacterized protein. (683 aa)    
Predicted Functional Partners:
EPRS1
Glutamyl-prolyl-tRNA synthetase.
   
 
 0.663
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
   
 0.619
PRPF4B
Pre-mRNA processing factor 4B.
   
  
 0.598
PTBP2
Polypyrimidine tract binding protein 2.
   
 0.568
SACM1L
SAC1 like phosphatidylinositide phosphatase.
      
 0.552
PTBP1
Polypyrimidine tract binding protein 1.
   
 0.550
PTBP3
Polypyrimidine tract binding protein 3.
   
 0.550
BUD13
BUD13 homolog.
      
 0.530
TRA2B
Transformer 2 beta homolog.
    
 0.519
HNRNPC
RRM domain-containing protein.
    
 0.481
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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