Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EPDR1Ependymin related 1. (209 aa)    
Predicted Functional Partners:
TRMT9B
tRNA methyltransferase 9B (putative).
      
 0.829
LOC102366470
tRNA methyltransferase 9B.
      
 0.784
LOC102354290
Uncharacterized protein.
    
 
 0.763
GPR141
G protein-coupled receptor 141.
      
 0.748
PMEPA1
Prostate transmembrane protein, androgen induced 1.
      
 0.733
LONRF1
LON peptidase N-terminal domain and ring finger 1.
      
 0.709
H3BGV7_LATCH
LON peptidase N-terminal domain and ring finger 1.
      
 0.709
CPA1
Carboxypeptidase A1.
      
 0.708
STARD3NL
STARD3 N-terminal like.
      
 0.697
SQSTM1
Sequestosome 1.
    
 
 0.694
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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