Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3AA98_LATCHUncharacterized protein. (223 aa)    
Predicted Functional Partners:
LOC102350007
Small ubiquitin-related modifier.
    
 0.890
LOC102347040
Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.771
LOC102365863
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.771
BRPF3
Bromodomain and PHD finger containing 3.
    
 0.568
LOC102345465
Uncharacterized protein.
    
 0.566
H3AN32_LATCH
Uncharacterized protein.
    
 0.566
SUMO3
Small ubiquitin-related modifier.
    
 0.525
LOC102363126
Small ubiquitin-related modifier.
    
 0.525
KCTD2
Potassium channel tetramerization domain containing 2.
    
 0.514
RPS26
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
      
 0.508
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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