Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
STX12Syntaxin 12; Belongs to the syntaxin family. (289 aa)    
Predicted Functional Partners:
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.968
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.964
STX5
Syntaxin 5; Belongs to the syntaxin family.
    
 0.959
VAMP7
Vesicle associated membrane protein 7; Belongs to the synaptobrevin family.
   
 0.959
STX8
Syntaxin 8.
   
 0.956
GOSR2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.950
SNAP29
Synaptosome associated protein 29.
    
 0.948
SNAP47
Synaptosome associated protein 47.
    
 0.948
NAPG
NSF attachment protein gamma.
   
 0.939
SNAP23
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.938
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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