STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPATA7Spermatogenesis associated 7. (398 aa)    
Predicted Functional Partners:
SPATA17
Spermatogenesis associated 17.
      
 0.790
RPGRIP1
RPGR interacting protein 1.
   
 
 0.747
RD3
Retinal degeneration 3, GUCY2D regulator.
      
 0.714
SPATA6
Spermatogenesis associated 6.
      
 0.656
SPATA20
Spermatogenesis associated 20.
      
 0.653
IQCB1
IQ motif containing B1.
      
 0.651
CEP290
Centrosomal protein 290.
      
 0.647
KCNJ13
Potassium voltage-gated channel subfamily J member 13.
      
 0.603
AIPL1
Aryl hydrocarbon receptor interacting protein like 1.
      
 0.603
TTC8
Tetratricopeptide repeat domain 8.
   
  
 0.586
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.