STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3ABE2_LATCHTPR_REGION domain-containing protein. (216 aa)    
Predicted Functional Partners:
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.707
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
   
 0.586
EPRS1
Glutamyl-prolyl-tRNA synthetase.
   
 
 0.520
RPS6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
   0.457
RPS2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
   0.457
RPS20
Ribosomal_S10 domain-containing protein.
   
   0.446
RPS23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
   0.440
ARID4A
AT-rich interaction domain 4A.
    
 
 0.436
APOBEC2
Apolipoprotein B mRNA editing enzyme catalytic subunit 2.
     
 0.433
GRSF1
G-rich RNA sequence binding factor 1.
   
 0.403
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.