STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3AF29_LATCHUncharacterized protein. (324 aa)    
Predicted Functional Partners:
LOC102358185
VLIG-type G domain-containing protein.
 
    0.761
FANCM
FA complementation group M.
    
 0.664
POLD2
DNA polymerase delta 2, accessory subunit.
    
 0.655
LOC102361814
Tudor domain-containing protein.
    
 0.642
POLD1
DNA polymerase.
   
 0.598
MUS81
Uncharacterized protein.
    
 0.583
SNRPD2
Small nuclear ribonucleoprotein Sm D2.
    
 0.576
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.562
H2ZZC6_LATCH
Sm domain-containing protein.
    
  0.543
DDX20
DEAD-box helicase 20.
   
 0.522
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.