STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102366049Rho/rac guanine nucleotide exchange factor (GEF) 18b. (1052 aa)    
Predicted Functional Partners:
LOC102348524
Uncharacterized protein.
   
 0.975
RHOA
Uncharacterized protein.
   
 0.975
LOC102350273
Uncharacterized protein.
   
 0.768
RHOC
Ras homolog family member Cb.
   
 0.768
CGN
Cingulin.
     
 0.686
RASAL3
RAS protein activator like 3.
    
 
 0.674
RRAD
RRAD, Ras related glycolysis inhibitor and calcium channel regulator.
    
 0.672
CDC42BPB
CDC42 binding protein kinase beta; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.
   
 0.646
RND3
Rho family GTPase 3.
   
 0.595
RND1
Rho family GTPase 1.
   
 0.595
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.