STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3AHH6_LATCHRHD domain-containing protein. (288 aa)    
Predicted Functional Partners:
NFATC4
Uncharacterized protein.
 
      0.899
H3B381_LATCH
Uncharacterized protein.
    
 0.830
MIB2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.830
LOC102346166
Ubiquitin-like domain-containing protein.
   
  0.751
RPS27A
Ribosomal protein S27a.
   
  0.751
LOC102350907
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.750
KXD1
Ubiquitin-like domain-containing protein.
    
  0.750
TRADD
Death domain-containing protein.
   
 
 0.689
POLD1
DNA polymerase.
      
 0.685
LTA
Lymphotoxin alpha.
    
 0.683
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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