STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3AM54_LATCHUncharacterized protein. (972 aa)    
Predicted Functional Partners:
CBX8
Chromobox 8.
    
 0.724
CBX4
Chromobox 4.
    
 0.612
CBX2
Chromobox 2.
    
 0.581
RNF2
Ring finger protein 2.
    
 0.577
RING1
Ring finger protein 1.
    
 0.577
PCGF2
Polycomb group ring finger 2.
    
 0.565
BMI1
Bmi1 polycomb ring finger oncogene 1b.
    
 0.565
SCML2
Scm polycomb group protein like 2.
    
 0.558
SCMH1
Scm polycomb group protein homolog 1.
    
 0.558
CFI
Uncharacterized protein; Belongs to the peptidase S1 family.
   
 0.546
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.