STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3AP77_LATCHEndostatin domain-containing protein. (188 aa)    
Predicted Functional Partners:
COL11A1
Fibrillar collagen NC1 domain-containing protein.
 
  
  0.901
H3AT52_LATCH
Fibrillar collagen NC1 domain-containing protein.
 
  
  0.829
H2ZVD4_LATCH
Uncharacterized protein.
 
  
  0.792
COL9A3
Collagen type IX alpha 3 chain.
 
  
  0.665
MARCO
SRCR domain-containing protein.
 
  
  0.551
H3AA95_LATCH
FZ domain-containing protein.
 
      0.509
COL8A1
Collagen type VIII alpha 1 chain.
 
  
  0.493
COL5A2
Collagen type V alpha 2 chain.
 
  
  0.457
COL5A3
LAM_G_DOMAIN domain-containing protein.
 
  
  0.439
COL9A1
LAM_G_DOMAIN domain-containing protein.
 
  
  0.430
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.