STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC90BCoiled-coil domain containing 90B. (257 aa)    
Predicted Functional Partners:
TRMT1L
tRNA methyltransferase 1 like; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
      
 0.866
TMX1
Thioredoxin related transmembrane protein 1.
      
 0.860
FAM32A
Family with sequence similarity 32 member A.
   
  
 0.702
FXR1
FMR1 autosomal homolog 1.
      
 0.653
NOB1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
      
 0.619
ANKRD42
Ankyrin repeat domain 42.
      
 0.616
NIPAL3
NIPA like domain containing 3.
      
 0.568
RAB30
RAB30, member RAS oncogene family.
      
 0.555
PCF11
PCF11 cleavage and polyadenylation factor subunit.
      
 0.429
MICU1
Mitochondrial calcium uptake 1.
      
 0.429
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.