STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL16A1Collagen type XVI alpha 1 chain. (1581 aa)    
Predicted Functional Partners:
FBLN2
Fibulin 2.
    
 0.576
H3ATS1_LATCH
Uncharacterized protein.
  
 
0.453
PALLD
Palladin, cytoskeletal associated protein.
    
 0.430
SMARCA4
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.
    
 
 0.429
COL6A1-2
Uncharacterized protein.
   
 0.426
FBLN5
Fibulin 5.
   
 0.421
COL6A2
Collagen type VI alpha 2 chain.
  
0.417
FBN2
Uncharacterized protein.
   
 0.412
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.