STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3AS24_LATCHUncharacterized protein. (270 aa)    
Predicted Functional Partners:
UVRAG
UV radiation resistance associated.
 
   
  0.989
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.971
BECN1
Beclin 1, autophagy related.
    
 0.970
PIK3R4
Phosphoinositide-3-kinase regulatory subunit 4.
    
 0.965
SH3GLB1
SH3 domain containing GRB2 like, endophilin B1.
    
 0.958
RUBCN
Rubicon autophagy regulator.
    
 
 0.928
GABARAPL1
GABA type A receptor associated protein like 1.
     
 0.587
GABARAPL2
GABA type A receptor associated protein like 2.
     
 0.587
GABARAPL1-2
Uncharacterized protein.
     
 0.587
VPS16
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
    
 
 0.553
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.