STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NHLH1Nescient helix-loop-helix 1. (129 aa)    
Predicted Functional Partners:
H3AC16_LATCH
X-ray repair complementing defective repair in Chinese hamster cells 1.
      
 0.747
CNGA2
Cyclic nucleotide gated channel subunit alpha 2.
      
 0.663
GSC
Goosecoid homeobox.
    
 0.601
TCF4
Transcription factor 4.
    
 0.588
TCF12
Transcription factor 12.
    
 0.588
TCF3
Transcription factor 3.
    
 0.588
PTGFRN
Prostaglandin F2 receptor inhibitor.
      
 0.501
PCSK1
Proprotein convertase subtilisin/kexin type 1; Belongs to the peptidase S8 family.
      
 0.489
LDB1
LIM domain binding 1.
    
 0.485
LDB2
LIM domain binding 2.
    
 0.485
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.