STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102358164Zgc:101559. (231 aa)    
Predicted Functional Partners:
ATG16L2
ATG16 autophagy related 16-like 2 (S. cerevisiae).
    
 0.951
RAB33B
RAB33B, member RAS oncogene family.
  
  
 
0.902
TRAPPC1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.805
TRAPPC4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.787
TRAPPC2B
Trafficking protein particle complex 2B.
    
 0.777
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.776
USO1
USO1 vesicle transport factor.
   
 0.748
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.745
TRAPPC6B
Trafficking protein particle complex 6B.
   
 0.712
LOC102352047
Trafficking protein particle complex 6b-like.
   
 0.712
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.