STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC47Coiled-coil domain containing 47. (478 aa)    
Predicted Functional Partners:
TMCO1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
    
 
 0.983
TMEM147
Transmembrane protein 147.
    
 
 0.936
NCLN
Nicalin.
    
 
 0.931
RPL3
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
   0.798
RPL18A
60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.
   
   0.798
RPL13A
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
   0.795
WDR83OS
WD repeat domain 83 opposite strand.
    
 
 0.794
RPL11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
   0.794
RPL7A
Ribosomal protein L7a.
   
   0.790
RPL30
Ribosomal protein L30.
   
   0.787
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.