STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3AYY9_LATCHUncharacterized protein. (127 aa)    
Predicted Functional Partners:
PRKCZ
Protein kinase C; Belongs to the protein kinase superfamily.
    
 0.864
PRKCI
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.864
H3ACT9_LATCH
PDZ domain-containing protein.
    
 0.781
H3AHQ4_LATCH
PB1 domain-containing protein.
    
 0.781
PARD6B
Par-6 family cell polarity regulator beta.
    
 0.781
PARD6A
Par-6 family cell polarity regulator alpha.
    
 0.781
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.615
IFT57
Intraflagellar transport 57.
    
 0.599
RPS27A
Ribosomal protein S27a.
   
  0.597
TRAF3IP1
TRAF3 interacting protein 1.
    
 0.578
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.