STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTCARNA 3'-terminal phosphate cyclase. (365 aa)    
Predicted Functional Partners:
BMS1
BMS1 ribosome biogenesis factor.
   
 0.962
UTP18
UTP18 small subunit processome component.
   
 0.957
UTP4
UTP4 small subunit processome component.
   
 0.955
LOC102361154
PWP2 small subunit processome component.
   
 
 0.952
WDR43
WD repeat domain 43.
   
 0.947
UTP15
UTP15 small subunit processome component.
   
 0.946
WDR75
WD repeat domain 75.
   
 0.945
NOL6
Nucleolar protein 6.
   
 0.944
IMP4
IMP U3 small nucleolar ribonucleoprotein 4.
   
 
 0.937
HEATR1
HEAT repeat containing 1.
   
 0.937
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.