STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3B193_LATCHUncharacterized protein. (344 aa)    
Predicted Functional Partners:
LRRC45
Leucine rich repeat containing 45.
      
 0.687
CCDC102B
Uncharacterized protein.
      
 0.685
CEP170
Centrosomal protein 170.
      
 0.551
CCP110
Centriolar coiled-coil protein 110.
      
 0.551
PLK4
Polo like kinase 4.
      
 0.485
SPATA6
Spermatogenesis associated 6.
      
 0.475
CEP44
Centrosomal protein 44.
      
 0.465
WDR5B
WD repeat domain 5B.
      
 0.459
CEP290
Centrosomal protein 290.
      
 0.451
NUP85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
      
 0.424
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.