PODNL1 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PODNL1

Podocan like 1. (599 aa)

Predicted Functional Partners:

ADGRL2

0.696

ADGRL1-2

0.696

ADGRL1

0.696

ADGRL3

0.696

LRRC8B

0.490

LOC106704656

0.481

H3AKF0_LATCH

0.479

LRRC10B

0.474

LRRC10

0.460

LRRC8E

0.458

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRL1	ADGRL1-2	ENSLACP00000015375	ENSLACP00000014294	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.921
ADGRL1	H3AKF0_LATCH	ENSLACP00000015375	ENSLACP00000010121	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Pannexin_like domain-containing protein.	0.696
ADGRL1	LOC106704656	ENSLACP00000015375	ENSLACP00000015109	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Pannexin_like domain-containing protein.	0.696
ADGRL1	LRRC10	ENSLACP00000015375	ENSLACP00000005680	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.696
ADGRL1	LRRC10B	ENSLACP00000015375	ENSLACP00000009311	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 10B.	0.696
ADGRL1	LRRC8B	ENSLACP00000015375	ENSLACP00000012380	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 8 VRAC subunit B.	0.696
ADGRL1	LRRC8E	ENSLACP00000015375	ENSLACP00000014592	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 8 VRAC subunit E.	0.696
ADGRL1	PODNL1	ENSLACP00000015375	ENSLACP00000016029	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Podocan like 1.	0.696
ADGRL1-2	ADGRL1	ENSLACP00000014294	ENSLACP00000015375	Uncharacterized protein.	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	0.921
ADGRL1-2	H3AKF0_LATCH	ENSLACP00000014294	ENSLACP00000010121	Uncharacterized protein.	Pannexin_like domain-containing protein.	0.696
ADGRL1-2	LOC106704656	ENSLACP00000014294	ENSLACP00000015109	Uncharacterized protein.	Pannexin_like domain-containing protein.	0.696
ADGRL1-2	LRRC10	ENSLACP00000014294	ENSLACP00000005680	Uncharacterized protein.	Uncharacterized protein.	0.697
ADGRL1-2	LRRC10B	ENSLACP00000014294	ENSLACP00000009311	Uncharacterized protein.	Leucine rich repeat containing 10B.	0.697
ADGRL1-2	LRRC8B	ENSLACP00000014294	ENSLACP00000012380	Uncharacterized protein.	Leucine rich repeat containing 8 VRAC subunit B.	0.696
ADGRL1-2	LRRC8E	ENSLACP00000014294	ENSLACP00000014592	Uncharacterized protein.	Leucine rich repeat containing 8 VRAC subunit E.	0.696
ADGRL1-2	PODNL1	ENSLACP00000014294	ENSLACP00000016029	Uncharacterized protein.	Podocan like 1.	0.696
ADGRL2	H3AKF0_LATCH	ENSLACP00000004019	ENSLACP00000010121	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Pannexin_like domain-containing protein.	0.696
ADGRL2	LOC106704656	ENSLACP00000004019	ENSLACP00000015109	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Pannexin_like domain-containing protein.	0.696
ADGRL2	LRRC10	ENSLACP00000004019	ENSLACP00000005680	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.696
ADGRL2	LRRC10B	ENSLACP00000004019	ENSLACP00000009311	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 10B.	0.696