STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FOXF1Forkhead box F1. (381 aa)    
Predicted Functional Partners:
NKX3-2
NK3 homeobox 2.
   
 
 0.583
TCF25
Transcription factor 25.
      
 0.570
HOXB6
Homeobox B6.
   
 0.551
BMP4
Bone morphogenetic protein 4.
     
 0.514
NKX2-5
NK2 homeobox 5.
    
 
 0.433
GATA6
GATA binding protein 6.
   
 0.426
GATA4
GATA binding protein 4.
   
 0.412
GATA5
GATA binding protein 5.
   
 0.412
LAMA5
Laminin subunit alpha 5.
    
 
 0.407
SRF
Serum response factor.
    
 
 0.402
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.