STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMF1TATA element modulatory factor 1. (1135 aa)    
Predicted Functional Partners:
GCC1
GRIP and coiled-coil domain containing 1.
     
 0.774
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
     
 0.747
VPS52
VPS52 subunit of GARP complex.
     
 0.745
VPS54
VPS54 subunit of GARP complex.
   
 
 0.742
VPS51
VPS51 subunit of GARP complex.
     
 0.732
COG7
Component of oligomeric golgi complex 7.
     
 0.726
VPS53
VPS53 subunit of GARP complex.
     
 0.724
COG4
Component of oligomeric golgi complex 4.
     
 0.724
COG3
Component of oligomeric golgi complex 3.
   
 
 0.721
COG1
Component of oligomeric golgi complex 1.
     
 0.721
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.