STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TUBTubby-like protein; Belongs to the TUB family. (499 aa)    
Predicted Functional Partners:
IFT122
Intraflagellar transport 122.
    
 0.694
IFT140
Intraflagellar transport 140.
    
 0.692
TTC21B
Tetratricopeptide repeat domain 21B.
    
 0.680
WDR35
WD repeat-containing protein 35.
    
 0.643
WDR19
WD repeat domain 19.
    
 0.623
LOC102349115
WD_REPEATS_REGION domain-containing protein.
    
 0.584
TTC21A
Tetratricopeptide repeat domain 21A.
    
 0.580
COPB1
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
      
 0.531
STK33
Protein kinase domain-containing protein.
   
 
 0.510
PSMA1
Proteasome subunit alpha type.
     
 0.509
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.