STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GTF3AGeneral transcription factor IIIA. (298 aa)    
Predicted Functional Partners:
WDR83
WD repeat domain 83.
   
 0.787
WDR83OS
WD repeat domain 83 opposite strand.
      
 0.772
GTF3C1
General transcription factor IIIC subunit 1.
    
 0.755
PSPN
Persephin.
      
 0.700
BRF1
BRF1 RNA polymerase III transcription initiation factor subunit.
   
 
 0.661
ASF1B
Anti-silencing function 1B histone chaperone.
    
 
 0.649
GTF3C3
General transcription factor IIIC subunit 3.
    
 0.621
POLR3C
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.603
GTF3C4
General transcription factor IIIC subunit 4.
    
 0.567
POLR2F
RNA polymerase II subunit F.
   
 
 0.566
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.