STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102348996Mago homolog, exon junction complex subunit. (148 aa)    
Predicted Functional Partners:
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.999
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.999
PYM1
PYM homolog 1, exon junction complex associated factor.
    
 
 0.997
ALYREF
Aly/REF export factor.
   
 0.994
CASC3
CASC3 exon junction complex subunit.
    
 0.993
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
     
 0.975
LOC102345465
Uncharacterized protein.
   
 0.972
H3AN32_LATCH
Uncharacterized protein.
   
 0.972
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.958
SRSF1
Serine and arginine rich splicing factor 1a.
   
 0.957
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.