LMO1 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LMO1

LIM domain only 1. (156 aa)

Predicted Functional Partners:

LDB1

0.820

LDB2

0.820

TAL1

0.743

GATA1

0.604

COPB1

0.594

PSMA1

0.581

STK33

0.580

GATA2

0.570

GATA3

0.562

CBFB

0.547

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBFB	GATA1	ENSLACP00000008364	ENSLACP00000010139	Core-binding factor subunit beta.	GATA binding protein 1b.	0.702
CBFB	GATA2	ENSLACP00000008364	ENSLACP00000017265	Core-binding factor subunit beta.	GATA binding protein 2.	0.711
CBFB	GATA3	ENSLACP00000008364	ENSLACP00000003446	Core-binding factor subunit beta.	GATA binding protein 3.	0.711
CBFB	LDB1	ENSLACP00000008364	ENSLACP00000007228	Core-binding factor subunit beta.	LIM domain binding 1.	0.651
CBFB	LDB2	ENSLACP00000008364	ENSLACP00000011034	Core-binding factor subunit beta.	LIM domain binding 2.	0.651
CBFB	LMO1	ENSLACP00000008364	ENSLACP00000017247	Core-binding factor subunit beta.	LIM domain only 1.	0.547
CBFB	TAL1	ENSLACP00000008364	ENSLACP00000012908	Core-binding factor subunit beta.	TAL bHLH transcription factor 1, erythroid differentiation factor.	0.756
COPB1	LMO1	ENSLACP00000014430	ENSLACP00000017247	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	LIM domain only 1.	0.594
COPB1	PSMA1	ENSLACP00000014430	ENSLACP00000014270	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Proteasome subunit alpha type.	0.715
COPB1	STK33	ENSLACP00000014430	ENSLACP00000022093	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Protein kinase domain-containing protein.	0.704
GATA1	CBFB	ENSLACP00000010139	ENSLACP00000008364	GATA binding protein 1b.	Core-binding factor subunit beta.	0.702
GATA1	GATA2	ENSLACP00000010139	ENSLACP00000017265	GATA binding protein 1b.	GATA binding protein 2.	0.755
GATA1	GATA3	ENSLACP00000010139	ENSLACP00000003446	GATA binding protein 1b.	GATA binding protein 3.	0.533
GATA1	LDB1	ENSLACP00000010139	ENSLACP00000007228	GATA binding protein 1b.	LIM domain binding 1.	0.860
GATA1	LDB2	ENSLACP00000010139	ENSLACP00000011034	GATA binding protein 1b.	LIM domain binding 2.	0.645
GATA1	LMO1	ENSLACP00000010139	ENSLACP00000017247	GATA binding protein 1b.	LIM domain only 1.	0.604
GATA1	TAL1	ENSLACP00000010139	ENSLACP00000012908	GATA binding protein 1b.	TAL bHLH transcription factor 1, erythroid differentiation factor.	0.981
GATA2	CBFB	ENSLACP00000017265	ENSLACP00000008364	GATA binding protein 2.	Core-binding factor subunit beta.	0.711
GATA2	GATA1	ENSLACP00000017265	ENSLACP00000010139	GATA binding protein 2.	GATA binding protein 1b.	0.755
GATA2	LDB1	ENSLACP00000017265	ENSLACP00000007228	GATA binding protein 2.	LIM domain binding 1.	0.747