STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM12LSM12 homolog. (194 aa)    
Predicted Functional Partners:
ATXN2
Ataxin 2.
    
 
 0.925
ATXN2L
Ataxin 2 like.
    
 
 0.925
LOC102367138
DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.
    
 
 0.854
DDX6
DEAD-box helicase 6; Belongs to the DEAD box helicase family.
    
 
 0.854
TRNAU1AP
tRNA selenocysteine 1 associated protein 1.
    
 
 0.850
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
   
 
 0.721
RTRAF
RNA transcription, translation and transport factor.
    
 
 0.640
ZCCHC4
Zinc finger CCHC-type containing 4.
      
 0.617
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
  
 0.612
LSM10
LSM10, U7 small nuclear RNA associated.
   
  
 0.606
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.