STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS54VPS54 subunit of GARP complex. (980 aa)    
Predicted Functional Partners:
VPS53
VPS53 subunit of GARP complex.
   
 0.999
VPS52
VPS52 subunit of GARP complex.
    
 0.999
VPS51
VPS51 subunit of GARP complex.
   
 0.995
STX16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.930
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.900
COG4
Component of oligomeric golgi complex 4.
    
 0.900
COG3
Component of oligomeric golgi complex 3.
     
 0.898
COG7
Component of oligomeric golgi complex 7.
     
 0.897
VPS50
VPS50 subunit of EARP/GARPII complex.
   
 
 0.895
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 
 0.887
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.