STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTPREProtein tyrosine phosphatase receptor type E. (701 aa)    
Predicted Functional Partners:
H3AVJ3_LATCH
Ig-like domain-containing protein.
 
  
   0.868
PITPNC1
Phosphatidylinositol transfer protein cytoplasmic 1.
      
 0.860
H2ZWE3_LATCH
Uncharacterized protein.
 
  
   0.812
PTPRT-2
Uncharacterized protein.
 
  
   0.792
GRB2
Growth factor receptor bound protein 2.
   
 0.712
H3A2M8_LATCH
Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.
 
 
   0.703
IL1RAP
Interleukin 1 receptor accessory protein.
    
 0.663
H3BD56_LATCH
Uncharacterized protein.
    
 0.615
H2ZXI9_LATCH
MAM domain-containing protein.
 
  
   0.555
SLITRK2
SLIT and NTRK like family member 2.
    
 0.541
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.