NGRN protein (Latimeria chalumnae) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

NGRN

Neugrin, neurite outgrowth associated. (318 aa)

Predicted Functional Partners:

FASTKD2

0.786

TRUB2

0.671

GTPBP10

0.603

PTCD1

0.588

DDX28

0.555

ACTR8

0.532

RPUSD3

0.518

RPUSD4

0.518

RCC1L

0.478

MRM3

0.472

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTR8	NGRN	ENSLACP00000011797	ENSLACP00000018611	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.	Neugrin, neurite outgrowth associated.	0.532
DDX28	FASTKD2	ENSLACP00000006288	ENSLACP00000005913	DEAD-box helicase 28.	FAST kinase domains 2.	0.711
DDX28	GTPBP10	ENSLACP00000006288	ENSLACP00000017299	DEAD-box helicase 28.	GTP binding protein 10.	0.819
DDX28	MRM3	ENSLACP00000006288	ENSLACP00000008085	DEAD-box helicase 28.	Mitochondrial rRNA methyltransferase 3.	0.933
DDX28	NGRN	ENSLACP00000006288	ENSLACP00000018611	DEAD-box helicase 28.	Neugrin, neurite outgrowth associated.	0.555
DDX28	PTCD1	ENSLACP00000006288	ENSLACP00000012680	DEAD-box helicase 28.	Pentatricopeptide repeat domain 1.	0.502
DDX28	RPUSD3	ENSLACP00000006288	ENSLACP00000007139	DEAD-box helicase 28.	Uncharacterized protein.	0.500
DDX28	RPUSD4	ENSLACP00000006288	ENSLACP00000012516	DEAD-box helicase 28.	RNA pseudouridine synthase D4.	0.500
DDX28	TRUB2	ENSLACP00000006288	ENSLACP00000001692	DEAD-box helicase 28.	TruB pseudouridine synthase family member 2.	0.609
FASTKD2	DDX28	ENSLACP00000005913	ENSLACP00000006288	FAST kinase domains 2.	DEAD-box helicase 28.	0.711
FASTKD2	NGRN	ENSLACP00000005913	ENSLACP00000018611	FAST kinase domains 2.	Neugrin, neurite outgrowth associated.	0.786
FASTKD2	PTCD1	ENSLACP00000005913	ENSLACP00000012680	FAST kinase domains 2.	Pentatricopeptide repeat domain 1.	0.700
FASTKD2	RCC1L	ENSLACP00000005913	ENSLACP00000019517	FAST kinase domains 2.	RCC1 like.	0.420
FASTKD2	RPUSD3	ENSLACP00000005913	ENSLACP00000007139	FAST kinase domains 2.	Uncharacterized protein.	0.536
FASTKD2	RPUSD4	ENSLACP00000005913	ENSLACP00000012516	FAST kinase domains 2.	RNA pseudouridine synthase D4.	0.536
FASTKD2	TRUB2	ENSLACP00000005913	ENSLACP00000001692	FAST kinase domains 2.	TruB pseudouridine synthase family member 2.	0.727
GTPBP10	DDX28	ENSLACP00000017299	ENSLACP00000006288	GTP binding protein 10.	DEAD-box helicase 28.	0.819
GTPBP10	MRM3	ENSLACP00000017299	ENSLACP00000008085	GTP binding protein 10.	Mitochondrial rRNA methyltransferase 3.	0.745
GTPBP10	NGRN	ENSLACP00000017299	ENSLACP00000018611	GTP binding protein 10.	Neugrin, neurite outgrowth associated.	0.603
GTPBP10	RPUSD3	ENSLACP00000017299	ENSLACP00000007139	GTP binding protein 10.	Uncharacterized protein.	0.459