TRPT1 protein (Latimeria chalumnae) - STRING interaction network

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Score

TRPT1

tRNA phosphotransferase 1. (242 aa)

Predicted Functional Partners:

NUDT22

0.860

RTCB

0.756

XPOT

0.708

H3AZT8_LATCH

0.699

LOC102357927

0.694

TSEN2

0.686

TSEN54

0.685

FAM98B

0.685

PUSL1

0.612

RTCA

0.584

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAM98B	RTCB	ENSLACP00000012481	ENSLACP00000014805	Family with sequence similarity 98 member B.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.945
FAM98B	TRPT1	ENSLACP00000012481	ENSLACP00000019239	Family with sequence similarity 98 member B.	tRNA phosphotransferase 1.	0.685
H3AZT8_LATCH	RTCB	ENSLACP00000015159	ENSLACP00000014805	tRNA_int_endo domain-containing protein.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.670
H3AZT8_LATCH	TRPT1	ENSLACP00000015159	ENSLACP00000019239	tRNA_int_endo domain-containing protein.	tRNA phosphotransferase 1.	0.699
H3AZT8_LATCH	TSEN2	ENSLACP00000015159	ENSLACP00000009599	tRNA_int_endo domain-containing protein.	tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]	0.969
H3AZT8_LATCH	TSEN54	ENSLACP00000015159	ENSLACP00000010786	tRNA_int_endo domain-containing protein.	tRNA splicing endonuclease subunit 54.	0.895
H3AZT8_LATCH	XPOT	ENSLACP00000015159	ENSLACP00000016294	tRNA_int_endo domain-containing protein.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.429
LOC102357927	TRPT1	ENSLACP00000010163	ENSLACP00000019239	VKc domain-containing protein.	tRNA phosphotransferase 1.	0.694
NUDT22	PUSL1	ENSLACP00000015777	ENSLACP00000021392	Nudix hydrolase 22.	tRNA pseudouridine synthase.	0.420
NUDT22	TRPT1	ENSLACP00000015777	ENSLACP00000019239	Nudix hydrolase 22.	tRNA phosphotransferase 1.	0.860
PUSL1	NUDT22	ENSLACP00000021392	ENSLACP00000015777	tRNA pseudouridine synthase.	Nudix hydrolase 22.	0.420
PUSL1	TRPT1	ENSLACP00000021392	ENSLACP00000019239	tRNA pseudouridine synthase.	tRNA phosphotransferase 1.	0.612
RTCA	RTCB	ENSLACP00000015522	ENSLACP00000014805	RNA 3'-terminal phosphate cyclase.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.870
RTCA	TRPT1	ENSLACP00000015522	ENSLACP00000019239	RNA 3'-terminal phosphate cyclase.	tRNA phosphotransferase 1.	0.584
RTCB	FAM98B	ENSLACP00000014805	ENSLACP00000012481	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Family with sequence similarity 98 member B.	0.945
RTCB	H3AZT8_LATCH	ENSLACP00000014805	ENSLACP00000015159	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	tRNA_int_endo domain-containing protein.	0.670
RTCB	RTCA	ENSLACP00000014805	ENSLACP00000015522	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	RNA 3'-terminal phosphate cyclase.	0.870
RTCB	TRPT1	ENSLACP00000014805	ENSLACP00000019239	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	tRNA phosphotransferase 1.	0.756
TRPT1	FAM98B	ENSLACP00000019239	ENSLACP00000012481	tRNA phosphotransferase 1.	Family with sequence similarity 98 member B.	0.685
TRPT1	H3AZT8_LATCH	ENSLACP00000019239	ENSLACP00000015159	tRNA phosphotransferase 1.	tRNA_int_endo domain-containing protein.	0.699