STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZDHHC16Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (374 aa)    
Predicted Functional Partners:
MMS19
MMS19 homolog, cytosolic iron-sulfur assembly component.
      
 0.673
MAPK8
Mitogen-activated protein kinase.
      
 0.669
CKAP4
Cytoskeleton associated protein 4.
   
 
 0.645
SKA2
Spindle and kinetochore associated complex subunit 2.
   
 
 0.574
SKA1
Spindle and kinetochore associated complex subunit 1.
   
 
 0.568
GDF10
Growth differentiation factor 10.
   
  
 0.510
CLSPN
Claspin.
   
 
 0.477
TIMELESS
Timeless circadian regulator.
   
 
 0.476
TIPIN
TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
   
 
 0.469
RPA3
Replication protein A3.
   
   0.455
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.